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Research agent skills

291 skills that teach Claude and other agents research work, from the most-starred GitHub repositories first. Each page explains what the skill does, who it suits, what it needs, and how to install it.

Building skills & agentsCreative & mediaData & analysisDesign & front-endDevOps & cloudDevelopmentDocuments & officeMarketing & contentProductivity & opsSecurityTesting & QAWriting & communication
  1. 1Background Research Agent · researchDelegates a research question to a background agent that saves cited findings as a Markdown file
  2. 2Competitive Report Structure · competitive-report-structureAssembles scored competitor cards into a structured, decision-ready competitive report
  3. 3Deep Research with Citations · deep-researchRuns multi-source web research and writes cited reports using firecrawl and exa tools
  4. 4Exa Neural Search · exa-searchLets your agent search the web, code docs, companies and people via Exa's search engine.
  5. 5Market Research · market-researchRun sourced market, competitor, and investor research that ends in a clear decision
  6. 6Deep Research · deep-researchRuns multi-source research on complex topics and returns a synthesized, cited-style report with trade-off tables.
  7. 7Graphify Knowledge Graph · graphifyTurns a folder of code, docs, or media into a persistent, queryable knowledge graph
  8. 8Last 30 Days Community Research · last30daysGathers recent social and community reactions on a topic and writes a sourced Markdown briefing.
  9. 9X Research Sentiment Briefing · x-researchSummarizes public X/Twitter sentiment on a topic into a cited Markdown report, using only sources actually available.
  10. 10Understand Knowledge Wiki Graph · understand-knowledgeTurns a Karpathy-style markdown wiki into an interactive knowledge graph dashboard.
  11. 11Academic Paper Review · academic-paper-reviewGives structured, peer-review-style critiques of research papers, preprints and arXiv links.
  12. 12Consulting-Grade Research Reports · consulting-analysisBuilds structured analysis frameworks and polished consulting-style market or financial research reports
  13. 13Deep Research Methodology · deep-researchMakes the agent run multi-angle web research before answering or generating content
  14. 14GitHub Deep Research · github-deep-researchProduces multi-round, cited research reports on a GitHub repository and its ecosystem
  15. 15Systematic Literature Review · systematic-literature-reviewSearches arXiv and writes a cited, cross-paper literature review in APA, IEEE, or BibTeX.
  16. 16Find Your Level Quiz · find-your-levelRuns a 10-question placement quiz to suggest where to start in the AI engineering curriculum.
  17. 17Author Expertise SEO Audit · author-expertiseAudits author bios and credentials on pages for SEO and E-E-A-T trust signals
  18. 18Contact Page Checker · contact-pageAudits a site's contact page for working contact methods, discoverability and SEO signals
  19. 19last30days Topic Research · last30daysResearches what people said about a topic in the last 30 days across Reddit, X, YouTube, HN and more
  20. 20Knowledge, Office and Research Matrix · cli-hub-matrix-knowledge-researchLets an agent pick the right research, note-taking, document and publishing tool for each job
  21. 21Exa Web Search CLI · cli-anything-exaLets an agent run Exa neural web searches and fetch page contents from the command line.
  22. 22Intelwatch Company Profiler · >-Generates company profiles (financials, tech stack, AI due diligence) from a domain name via a CLI.
  23. 23NotebookLM CLI Harness · cli-anything-notebooklmLets an agent list notebooks, manage sources, ask questions and download outputs via the notebooklm CLI
  24. 24Intelwatch Company Profiler · cli-anything-intelwatchGenerates company profiles (financials, tech stack, AI due diligence) from a domain via a CLI.
  25. 25Zotero Command-Line Helper · cli-anything-zoteroLets an agent read, cite, export and annotate your Zotero library through a command-line tool.
  26. 26Zotero Command-Line Helper · >-Lets an agent read, cite, export and annotate your Zotero reference library through a command-line tool.
  27. 27Adaptyv Protein Lab Assistant · adaptyvDesign protein assay experiments and submit them to Adaptyv's cloud lab via API
  28. 28AlphaGenome Variant Effects · alphagenomeLook up or compute AlphaGenome predicted effects of DNA variants on regulation and splicing
  29. 29Analytical Method Validation · analytical-method-validationPlans and checks analytical method validation studies under ICH, USP, CLSI or ISO frameworks
  30. 30BGPT Paper Search · bgpt-paper-searchSearch scientific papers and pull claim-level evidence from their full text via the BGPT service.
  31. 31Biopython Molecular Biology Toolkit · biopythonLets the agent write and run Biopython code for sequences, file formats, NCBI queries, BLAST, structures and trees.
  32. 32BioServices Bioinformatics Lookup · bioservicesQuery UniProt, KEGG, ChEMBL-linked compound IDs, QuickGO and Reactome data from Python
  33. 33CELLxGENE Census Querier · cellxgene-censusQuery versioned public single-cell transcriptomics data from CZ CELLxGENE Census without downloading whole datasets
  34. 34Cirq Quantum Circuits · cirqLets the agent build, simulate, and run quantum circuits with Google's Cirq framework
  35. 35Citation Management · citation-managementFind papers, verify references, and generate clean BibTeX entries from DOIs, PMIDs, and arXiv IDs.
  36. 36Clinical Decision-Support Research Evaluator · clinical-decision-supportDrafts research-only aggregate evaluation, evidence, cohort, and governance artifacts for clinical decision-support studies.
  37. 37COBRApy Metabolic Modeling · cobrapyRun constraint-based metabolic models: FBA, FVA, knockouts, media design and sampling with COBRApy
  38. 38DeepChem Molecular Property Prediction · deepchemGuides an agent through safe molecular property ML with DeepChem: featurization, scaffold splits, and validated training.
  39. 39DeepSpot-M Spatial Transcriptomics · deepspot-mPredicts gene expression maps from H&E histology tiles using the DeepSpot-M model
  40. 40DepMap Cancer Dependency Analysis · depmapQuery and analyze Cancer Dependency Map release data for cancer gene dependencies and drug response
  41. 41DiffDock Molecular Docking · diffdockGuides an agent through predicting how small molecules bind to proteins using DiffDock, with batch runs and pose triage.
  42. 42ESM protein models · esmGuides protein generation, ESMC embeddings and ESMFold2 folding with the Biohub esm SDK
  43. 43Exa Web Search and Extract · exa-searchSearch the web for scientific sources and batch-extract text from URLs and PDFs using Exa
  44. 44Experimental Design Planner · experimental-designPlans study layouts: randomization, blocking, factorial and response-surface designs, seeded allocation schedules.
  45. 45Folklore Variant Evidence · folklore-variant-evidenceLook up public ClinGen gene-disease and variant evidence via a hosted MCP endpoint
  46. 46Genomic Coordinates Converter · genomic-coordinatesConverts and checks genomic coordinates and variants so bioinformatics joins don't silently go wrong
  47. 47Ginkgo Cloud Lab Ordering · ginkgo-cloud-labGuides choosing, preparing, pricing and ordering lab protocols on Ginkgo Bioworks Cloud Lab
  48. 48Glycoengineering Assistant · glycoengineeringScans protein sequences for N-glycosylation sites and plans glycan-related engineering checks
  49. 49Hugging Science Catalog Finder · hugging-scienceFind and vet scientific datasets, models, blogs and Spaces from the Hugging Science catalog
  50. 50HypoGeniC Hypothesis Planning and Audit · hypogenicPlans and audits HypoGeniC hypothesis-generation runs on labeled text datasets, locally and without model calls
  51. 51Scientific Hypothesis Generation · hypothesis-generationStructures observations into testable, evidence-bounded hypotheses, rival explanations, and preregistration-ready plans
  52. 52Literature Review Assistant · literature-reviewRun structured literature reviews with recorded searches, citation checks, and Markdown/PDF output
  53. 53Market Research Reports · market-research-reportsBuilds auditable market research reports with sourced claims, sizing scenarios and sensitivity checks.
  54. 54Medicinal Chemistry Compound Filters · medchemScreens drug candidate molecules with drug-likeness rules, structural alerts and complexity filters.
  55. 55NCATS ARAX Knowledge Graph Lookup · ncats-araxRun bounded, provenance-rich biomedical knowledge-graph lookups against NCATS ARAX
  56. 56OMERO Microscopy Integration · omero-integrationLets an agent inspect, export and plan transfers of microscopy data on an OMERO server, with bounded, read-only defaults.
  57. 57Open Notebook Research Assistant · open-notebookLets an agent manage Open Notebook research notebooks, sources, and cited chats via its REST API.
  58. 58OpenPIV Flow Measurement · openpivMeasure fluid velocity fields from PIV image pairs, validate vectors, and compute vorticity and turbulence stats.
  59. 59Opentrons Lab Robot Protocols · opentrons-integrationWrite, review, simulate and troubleshoot Opentrons Flex and OT-2 lab-robot Python protocols
  60. 60pacsomatic Tumor-Normal Workflow Helper · pacsomaticPrepares and launches nf-core/pacsomatic tumor-normal PacBio HiFi analyses with checks and scheduler submission
  61. 61Paper Lookup · paper-lookupSearch 18 scholarly databases for papers, citations, full text and open-access PDFs with traceable provenance.
  62. 62GXL Paperclip Literature Search · paperclipSearch, read and cite biomedical papers, regulatory documents and trials via the GXL Paperclip CLI
  63. 63Paperzilla Research Feeds · paperzillaLets your agent read Paperzilla project feeds, search them, and open or export papers via the pz CLI
  64. 64Parallel Web Toolkit · parallel-webLets an agent search the web, extract pages, run research, enrich lists, and monitor changes via Parallel CLI
  65. 65PathML Computational Pathology Helper · pathmlGuides local PathML research on whole-slide images: loading, tiling, preprocessing, QC and planning.
  66. 66Pathogen Variant Surveillance · pathogen-variant-surveillanceLets an agent query live public genomic databases for variant lineage trends and mutation patterns.
  67. 67Peer Review Assistant · peer-reviewDrafts structured, evidence-bounded peer-review assessments for authorized manuscripts, with local-only checks.
  68. 68Phylogenetic Tree Builder · phylogeneticsBuilds and reads evolutionary trees from DNA or protein sequences using MAFFT, IQ-TREE and FastTree.
  69. 69PrimeKG Knowledge Graph Lookup · primekgQuery a pinned PrimeKG biomedical knowledge graph CSV for gene, drug, disease and phenotype links
  70. 70Primer Design and Specificity · primer-designDesigns and audits PCR and RT-qPCR primers with Primer3 and local off-target screening
  71. 71PyDESeq2 Differential Expression · pydeseq2Run bulk RNA-seq differential expression analysis with PyDESeq2 and validated statistical workflows
  72. 72PyOpenMS Mass Spectrometry Toolkit · pyopenmsLets the agent process mass spec data: feature detection, peptide ID, quantification and adduct annotation via pyOpenMS.
  73. 73Pyzotero Zotero Library Manager · pyzoteroLets an agent read, create, update, and export Zotero reference library items via the pyzotero client.
  74. 74RDKit Cheminformatics Toolkit · rdkitLets an agent parse, describe, and search molecules using RDKit, with bundled local scripts
  75. 75RELION cryo-EM refinement checker · relionValidates RELION cryo-EM particle data and runs refinement, half-map FSC and postprocessing steps
  76. 76RELSA Severity Assessment · relsa-severity-assessmentScores lab animal welfare severity per animal per day and forecasts future scores from multivariate readouts
  77. 77Research Lookup for Manuscripts · research-lookupGathers and organizes scholarly sources and evidence for a scientific manuscript or research brief.
  78. 78Scanpy Single-Cell Analysis · scanpyGuides an agent through scRNA-seq QC, clustering, marker ranking and plotting with Scanpy scripts
  79. 79Scholar Evaluation · scholar-evaluationGives developmental, evidence-traceable feedback on scholarly works and audits low-stakes assessment rubrics.
  80. 80Scientific Brainstorming · scientific-brainstormingStructured, transparent research-idea generation, critique and prioritization with decision logs
  81. 81Scientific Critical Thinking · scientific-critical-thinkingLets the agent appraise scientific claims, study design, statistics, bias and evidence quality.
  82. 82Scientific Schematic Generator · scientific-schematicsDraft publication-style scientific diagrams from text, with an AI quality review loop
  83. 83Tamarind Bio Molecular Tools · tamarindRun cloud protein structure, design, docking and binding tools via the Tamarind Bio API
  84. 84What-If Oracle · what-if-oracleStress-tests a research plan by structured what-if scenarios with assumptions, evidence and triggers
  85. 85Academic Search Router · nature-academic-searchLets an agent search papers across scholarly databases, verify citations, and manage bibliographies.
  86. 86Nature Literature Downloader · nature-downloaderFetches legal full-text papers via open access, publisher APIs, and your library's Chrome session
  87. 87Experiment Log Standardizer · nature-experiment-logTurns photos, voice notes and text from lab experiments into structured Markdown logs with IDs and archives.
  88. 88Nature Literature Pipeline · nature-literature-pipelineAutomatically finds, scores, summarizes and archives daily research papers for your field
  89. 89Nature Paper Card · nature-paper-cardTurns one scientific paper into a structured, evidence-linked deep-reading card with method and limitation analysis
  90. 90Nature Paper X-Ray · nature-paper-xrayReconstructs how a paper's authors got their results, checking the evidence behind each claim
  91. 91Nature Reference Verifier · nature-ref-verifierCross-checks academic references field by field against Crossref and other sources, then reports errors.
  92. 92Defuddle Web Extractor · defuddlePull clean, readable Markdown from web pages using the Defuddle command-line tool.
  93. 93Andru.ia Niche Intelligence · 20-andruia-niche-intelligenceBuilds a Spanish-language domain dossier on a project's industry: rules, UX patterns, and risks, with sources flagged
  94. 94ADHX X/Twitter Post Reader · adhxFetch an X/Twitter post as structured JSON to read, summarize, or check its engagement
  95. 95Brazilian Criminal Law Research · advogado-criminalGives informational research on Brazilian criminal law, Maria da Penha Act and domestic violence topics (not legal advice)
  96. 96Brazilian Legal Research Assistant · advogado-especialistaHelps research Brazilian law and organize facts and drafts, checking official sources and flagging when a lawyer is needed.
  97. 97Agent Evaluation Reporting · agent-evaluation-reportingWrite agent evaluation reports that keep successes, failures, timeouts and invalid runs distinct and comparable
  98. 98AgentFolio Agent Discovery · agentfolioHelps the agent find, compare and research autonomous AI agents using the AgentFolio directory
  99. 99Solo Math Proof Solver · soloHas Claude work through one hard math problem alone, saving notes as it goes, and end with a self-contained proof file.
  100. 100Cloud Metadata Path (CTF) · competition-cloud-metadata-pathGuides an agent through proving how cloud metadata credentials become accepted privilege in a CTF sandbox.
  101. 101Competition Queue Worker Drift · competition-queue-worker-driftTraces queue payloads, async workers, retries and worker-only config drift in CTF sandbox work
  102. 102CTF Web Runtime Analyst · competition-web-runtimeGuides an agent through tracing web, API, and auth flows in sandboxed CTF challenges
  103. 103CTF Sandbox Orchestrator · ctf-sandbox-orchestratorRoutes CTF and security challenge work to the right analysis playbook, with evidence-first steps.
  104. 104CTF Sandbox Entry · ctf-sandboxRoutes CTF, AWD and lab-range competition requests to a sandbox orchestrator after scope checks
  105. 105RF / SDR Security Research · radio-sdrGuides authorized radio (SDR) signal identification, demodulation analysis and lab-only replay feasibility studies
  106. 106Threat Intelligence OSINT · threat-intelligenceEnriches security indicators and threat campaigns using bounded public-source research, including X/Twitter search
  107. 107Fact Check · fact-checkCatch serious factual errors and AI hallucinations in course content before or during review
  108. 108Grounded Vault · grounded-vaultKeep a Markdown knowledge base where every claim traces to a source and staleness is checked with git.
  109. 109Memory Forensics · memory-forensicsGuides an agent through acquiring and analyzing RAM dumps with Volatility for incident response and malware triage.
  110. 110Competitive Landscape Analysis · competitive-landscapeMap competitors, spot market gaps, and draft positioning using Five Forces and Blue Ocean frameworks
  111. 111Market Sizing Analysis · market-sizing-analysisEstimate TAM, SAM and SOM market sizes for a startup idea using three methods
  112. 112Build Evidence Map · build-evidence-mapTurns a contested decision into a sourced map of supporting, opposing, and missing evidence
  113. 113Doublecheck Verification Pipeline · doublecheckMakes the agent extract claims from its output, find sources, and flag likely hallucinations.
  114. 114External Context Search · external-contextRuns parallel web searches and doc lookups on a topic and returns cited, synthesized findings.
  115. 115Evidence-Based Research · researchInvestigates open questions and returns sourced, verified findings instead of assumptions.
  116. 116Earnings Forecast & Consensus Gap · earnings-forecastBuilds EPS forecasts and flags earnings-surprise trading signals versus analyst consensus (A-shares focus).
  117. 117Geopolitical Risk Analysis · geopolitical-riskAdds a framework for scoring war, sanctions and supply-disruption risk and mapping it to asset moves
  118. 118Research Bias Self-Check · research-disciplineMakes the agent check itself for common research biases before investment research.
  119. 119Strategy Development Manager · strategy-dev-managerTurns a research paper into a registered, backtested, decay-monitored trading factor or strategy
  120. 120Volatility Mean-Reversion Strategy · volatilityGenerates long/short/flat trading signals from historical volatility percentile rankings on OHLCV price data.
  121. 121Campaign Attribution Analysis · analyzing-campaign-attribution-evidenceWeighs cyber-campaign evidence to assess which threat actor is likely responsible, with confidence levels.
  122. 122Certificate Transparency Phishing Monitor · analyzing-certificate-transparency-for-phishingWatches public certificate logs for lookalike domains that may be used in phishing
  123. 123Ransomware Leak Site Intelligence · analyzing-ransomware-leak-site-intelligenceSummarises ransomware group victim postings and trends from public tracking feeds for threat reports
  124. 124Threat Actor TTP Navigator Mapping · analyzing-threat-actor-ttps-with-mitre-navigatorMap a threat group's ATT&CK techniques and build Navigator heatmap layers to check defensive coverage gaps.
  125. 125MISP Threat Landscape Analyzer · analyzing-threat-landscape-with-mispSummarize a MISP threat-intel server's events, IOC types, actors and tag trends into a report
  126. 126Threat Actor Profiling from OSINT · building-threat-actor-profile-from-osintBuilds structured threat actor dossiers from public intelligence sources and ATT&CK data
  127. 127Open-Source Intelligence Collection · collecting-open-source-intelligenceGuides the agent through passive OSINT on threat actor infrastructure using Shodan, crt.sh, WHOIS, Maltego and SpiderFoot.
  128. 128Idea Lineage Tracer · idea-lineageTraces how one idea in your personal knowledge base evolved, with dated, cited evidence
  129. 129Blog & Feed Ingestion · blog-ingestTurns a whole blog or RSS/Atom feed into deduplicated source pages in your knowledge base.
  130. 130Perplexity Brain Research · perplexity-researchRuns web research via Perplexity, comparing results against your existing notes to surface only what's new.
  131. 131Research Compendium Builder · research-compendiumTurns a research topic into an archived source library plus one synthesized reference guide.
  132. 132Strategic Reading · strategic-readingReads a book, article, or transcript through one strategic problem you face and produces an applied playbook.
  133. 133Academic Claim Verifier · academic-verifyTraces a cited study or statistic back to its paper, data and replications, then writes a verdict page.
  134. 134Smart Search Router · smart-searchRoutes a search to the right OpenCLI site (AI, social, tech, shopping, travel) and reports what it searched.
  135. 135FDA QSR Audit Prep · fda-qsr-audit-prepPressure-tests US medical-device quality system readiness with six FDA-style audit questions
  136. 136ISO 13485 Audit Prep · iso13485-audit-prepPressure-tests medical-device QMS work with six audit questions before an internal or regulatory audit
  137. 137Competitor Analysis · competitor-analysisMaps direct competitors and finds differentiation opportunities for a product or market.
  138. 138Market Sizing (TAM, SAM, SOM) · market-sizingEstimate a product's total, serviceable and obtainable market with sourced, cross-checked numbers
  139. 139Sentiment Analysis for User Feedback · sentiment-analysisTurns large batches of user feedback into segment-level sentiment, pain points and recommendations
  140. 140User Segmentation · user-segmentationGroups users from feedback into 3+ behavior and needs-based segments with profiles and priorities
  141. 141Identify Assumptions (Existing Product) · identify-assumptions-existingStress-test a feature idea for an existing product and surface its riskiest assumptions
  142. 142Customer Interview Script · interview-scriptWrites a structured, Mom Test-style customer interview guide with probing questions and notes template
  143. 143Summarize Customer Interview · summarize-interviewTurns a customer interview transcript into a structured JTBD summary with action items
  144. 144PESTLE Analysis · pestle-analysisMap political, economic, social, tech, legal and environmental factors affecting a business or market
  145. 145Porter's Five Forces Analysis · porters-five-forcesAnalyze an industry's competitive forces and rate its attractiveness in a structured way.
  146. 146YouTube Transcript Downloader · baoyu-youtube-transcriptDownload YouTube transcripts, subtitles, and cover images as cached Markdown or SRT files
  147. 147横纵分析深度研究 · hv-analysisRuns a Horizontal-Vertical deep research on a product, company, or concept and outputs a styled PDF report
  148. 148Annual Security Reports Aggregator · AnnualReportsFind, fetch and compare cybersecurity annual reports from major vendors, with sourced figures
  149. 149ArXiv Paper Search · ArXivSearch, list and summarize arXiv research papers, with AlphaXiv overviews, by topic, category or ID.
  150. 150BiasCheck · BiasCheckAudit a URL, file, or text for study flaws, funding conflicts, and journalistic distortion
  151. 151CrimeStats · CrimeStatsPulls and compares US city crime rates, trends and recent incidents from public sources
  152. 152Novelty Causal Explanation Engine · NoveltyDevelops and stress-tests hard-to-vary causal theories for unexplained phenomena through multi-cycle evolutionary exploration.
  153. 153Pareto Topic Sweep · ParetoSweeps YouTube, GitHub and the web on a topic and reports past, current and frontier thinking with links.
  154. 154Multi-Source Research Skill · ResearchRuns multi-vendor web research with verified URLs and confidence-tagged findings at four depths.
  155. 155Security Market Data Lookup · SecurityMarketDataQuery curated cybersecurity funding, M&A, company and investor data from Return on Security's Signal.
  156. 156California Wastewater Tracker · WastewaterCAPulls California COVID, flu, RSV and other pathogen levels from public wastewater data.
  157. 157Ablation Planner · ablation-plannerPlans reviewer-proof ablation studies for a paper, then helps run them
  158. 158AlphaXiv Paper Lookup · alphaxivQuickly summarize a single arXiv paper using AlphaXiv's LLM-optimized overviews, with deeper fallbacks.
  159. 159arXiv Paper Search and Download · arxivSearch arXiv, fetch paper details, and download PDFs into a local papers folder.
  160. 160Auto Review Loop (Generic LLM) · auto-review-loop-llmRepeatedly has an external LLM review, critique and revise a research project until it's judged ready.
  161. 161Auto Review Loop (MiniMax) · auto-review-loop-minimaxRuns up to 4 rounds of automated research review and fixes using the MiniMax API.
  162. 162Citation Audit · citation-auditChecks every citation in a paper for existence, correct metadata, and whether it supports the claim made.
  163. 163Citation Cross-Check · citation-crosscheckAudits a paper's bibliography field-by-field against web records using two blind agents
  164. 164Communications Literature Review · comm-lit-reviewFinds and summarizes communications/networking papers, knowledge-base first, then IEEE, ScienceDirect, ACM and web.
  165. 165DeepXiv Paper Search & Reading · deepxivSearch open-access papers and read them progressively, from brief to single section, via DeepXiv
  166. 166DSE Loop Explorer · dse-loopAutonomously runs design space sweeps, tuning parameters until an objective or timeout is reached
  167. 167Exa Web Search · exa-searchSearch the broad web with Exa and pull highlights, text, or summaries from results
  168. 168Experiment Integrity Audit · experiment-auditHas an independent AI reviewer check your experiment results for fraud, fake ground truth and overclaiming.
  169. 169Experiment Bridge · experiment-bridgeTurns an experiment plan into running GPU experiments with initial results.
  170. 170Experiment Plan Builder · experiment-planTurns a research idea into a claim-driven experiment roadmap with ablations, run order and compute budget.
  171. 171Experiment Queue for GPU Batches · experiment-queueRuns large batches of ML experiments on remote GPU servers with retries and state tracking.
  172. 172Firecrawl Web Search and Scrape · firecrawl-searchSearch the web and read full pages as markdown via the Firecrawl API
  173. 173Formula Derivation Assistant · formula-derivationStructures scattered equations and assumptions into an honest, coherent research derivation document.
  174. 174Gemini Literature Search · gemini-searchFind research papers broadly via Google Gemini, beyond arXiv and Semantic Scholar keyword search
  175. 175Integrity Forensics Audit · integrity-forensicsRuns a pinned integrity audit on a paper and turns the findings into a block/warn gate
  176. 176Keenable Keyless Web Search · keenable-searchSearch the broad web and fetch pages as markdown without setting up a search API key
  177. 177Kill Argument Adversarial Review · kill-argumentStress-tests a paper with a strongest-possible rejection memo, then a point-by-point defense.
  178. 178Lean Formalize · lean-formalizeBuild and check Lean 4 proofs of math statements, then audit that the final theorem matches the original claim.
  179. 179Monitor Experiment Results · monitor-experimentCheck on running ML experiments on remote servers and summarize their results.
  180. 180Novelty Check · novelty-checkSearches the literature to see whether a research idea has already been done.
  181. 181OpenAlex Academic Search · openalexSearch OpenAlex for academic papers with citation, affiliation, funding and open-access metadata.
  182. 182Paper Claim Audit · paper-claim-auditChecks every number and comparison in a paper against raw result files using a fresh reviewer.
  183. 183Paper Figure Generator · paper-figureTurns experiment data into publication-style plots and LaTeX tables for research papers
  184. 184Patent Novelty Check · patent-novelty-checkAssesses an invention's novelty and inventive step against prior art, with a written report.
  185. 185Prior Art Search · prior-art-searchSearches patents and academic papers for prior art on an invention and writes a report.
  186. 186Proof Checker · proof-checkerLets the agent rigorously verify and fix a LaTeX math proof using a second AI reviewer.
  187. 187Proof Orchestrator · proof-orchestratorRuns multi-session proof projects with local-first attempts, manual GPT Pro handoff packages, and optional DeepSeek review.
  188. 188Proof Writer · proof-writerDrafts rigorous math proofs for ML/AI theory claims, flagging when a claim is not actually provable.
  189. 189Research Literature Review · research-litSearch, read and summarize academic papers across local PDFs, Zotero, Obsidian and the web.
  190. 190Research Review via External Reviewer · research-reviewGets a multi-round, adversarial critical review of your research from an external AI reviewer (Codex by default).
  191. 191Research Wiki · research-wikiBuilds a persistent, per-project research knowledge base of papers, ideas, experiments and claims.
  192. 192Result-to-Claim Gate · result-to-claimJudges whether experiment results support your intended claims and suggests the next step.
  193. 193Semantic Scholar Paper Search · semantic-scholarSearch published journal and conference papers via Semantic Scholar, with citations and venue info.
  194. 194Auto Review Loop · auto-review-loopMakes an agent repeatedly get Claude to review its research work, fix issues, and re-review until it passes.
  195. 195Novelty Check · novelty-checkChecks whether a research idea has already been published, using literature search and a second-model review.
  196. 196Research Review via Claude · research-reviewGet multi-round adversarial peer review of research from Claude through a local MCP bridge
  197. 197Research Idea Creator · idea-creatorBrainstorms, clusters and ranks research ideas for a broad topic, using Gemini as the reviewer.
  198. 198Idea Discovery Pipeline · idea-discoveryChains literature survey, idea generation, novelty checks and review into one research-ideas workflow
  199. 199arXiv Paper Search & Download · arxivSearch arXiv, fetch paper details, and download PDFs into a local paper folder
  200. 200DeepXiv Paper Search & Reading · deepxivSearch open-access academic papers and read them progressively, from brief summary to specific sections.
  201. 201Experiment Bridge · experiment-bridgeTurns an experiment plan into implemented code, deployed runs, and initial results.
  202. 202Research Idea Creator · idea-creatorBrainstorms, validates and ranks publishable research ideas from a broad research direction
  203. 203Idea Discovery Pipeline · idea-discoveryChains literature survey, idea brainstorming, novelty checks and review into one research workflow
  204. 204Integrity Forensics Paper Audit · integrity-forensicsRuns a deterministic statistical-integrity check on a paper and issues a block/warn/pass gate.
  205. 205Monitor Experiment Results · monitor-experimentChecks running ML experiments over SSH, W&B, or cloud backends and summarizes their results.
  206. 206Proof Checker · proof-checkerAdversarially reviews LaTeX math proofs, fixes gaps, and writes an audit report.
  207. 207Research Literature Review · research-litSearches and summarizes academic papers across local PDFs, Zotero, Obsidian, and the web
  208. 208Research Review with Selectable Reviewer · research-reviewGets a critical, multi-round review of your research from a separate AI reviewer
  209. 209Result-to-Claim Gate · result-to-claimJudges whether experiment results support your claims and suggests the next step
  210. 210Wiki Enrich · wiki-enrichFills in TODO summary sections of research-wiki paper pages using fetched paper abstracts and content.
  211. 211Training Health Check · training-checkPeriodically checks WandB training metrics to catch NaN, divergence, or stalled runs early
  212. 212Advanced LLM Evaluation · advanced-evaluationTeaches the agent to judge LLM outputs reliably using rubrics, pairwise comparisons and bias controls
  213. 213Intelligence Collection Expert Knowledge · collector-hand-skillLets an agent plan open-source intelligence research, extract entities, and track changes and sentiment over time.
  214. 214Deep Research Methodology · researcher-hand-skillGives the agent a structured method for researching questions, evaluating sources and citing them.
  215. 215SearXNG Search Specialist · searxngGuides the agent to run privacy-focused web searches through SearXNG with better queries and cited sources.
  216. 216Web Search Research Specialist · web-searchLets the agent research topics with cited, verified sources and clear synthesized answers
  217. 217Earnings Report Team (Four Investors) · earnings-teamAnalyses a company's earnings report from four investor viewpoints and drafts a WeChat article.
  218. 218Era Alpha Stock Research · era-alphaRuns a four-step framework to find and verify high-growth leader companies in a sector, with entry and exit rules.
  219. 219Financial Data Cross-Check · financial-dataPull company financials from two independent sources and flag discrepancies over 1%.
  220. 220Industry Funnel Stock Screener · industry-funnelNarrows a whole industry down to 3 value-investing picks through staged, documented screening
  221. 221Buffett-Style Pre-Buy Checklist · investment-checklistRuns a six-step value-investing checklist on stocks you name, with scoring and a written report
  222. 222Investment Research Framework · investment-researchRuns a structured, four-master (Buffett/Munger/Duan/Li Lu) investment research workflow on a company
  223. 223Investment Team Research · investment-teamRuns a four-role parallel equity research workflow with web search and verification scripts
  224. 224Private Company Research · private-company-researchRuns a multi-agent deep-research workflow to estimate a private company's real business value
  225. 225Investment Thesis Drift Checker · thesis-driftCompares two dated investment thesis reports and flags only evidence-based changes, not rewording
  226. 226Investment Thesis Tracker · thesis-trackerWrites down buy-sell rules for a stock and checks them each quarter against new data
  227. 227Bounded Autoresearch · autoresearchRuns a limited, source-cited web research loop and drafts a dossier for your vault after review.
  228. 228Defuddle Web Capture Planner · defuddlePlans web page cleaning safely and retains local HTML or Markdown files as raw source records
  229. 229Vault Passage Retrieval · wiki-retrieveSearch an Obsidian-style wiki vault for relevant passages using a local BM25 index with optional reranking.
  230. 230Biopython Bioinformatics Guide · biology-biopythonLets the agent write Biopython code for DNA/protein sequences, file parsing, BLAST searches and phylogenetic trees.
  231. 231RDKit Cheminformatics Guide · chemistry-rdkitLets the agent analyze molecules: parse SMILES, compute descriptors, fingerprints and substructure searches with RDKit.
  232. 232Hypothesis Formulation · hypothesis-formulationTurns observations into testable hypotheses, competing explanations, and experimental predictions
  233. 233Literature Search Methodology · literature-searchGuides the agent through systematic literature reviews: search strategy, screening, PRISMA flow, and synthesis.
  234. 234ResearchClaw Autonomous Research Pipeline · researchclawRuns a 23-stage pipeline that turns a research topic into a draft paper with experiments and charts
  235. 235Statistical Reporting · statistical-reportingPick the right statistical test and write APA-style results sections with effect sizes.
  236. 236FBA Metabolic Simulator · fba-simulatorRuns flux balance analysis and gene/reaction knockout simulations on metabolic models using COBRApy
  237. 237Flux Analyzer for Metabolic Models · flux-analyzerTurns FBA metabolic model outputs into gene essentiality, phase plane, sampling and pathway figures
  238. 238Genome-Scale Metabolic Model Builder · gsmm-builderBuilds or loads metabolic network models in COBRApy and exports them as validated JSON files
  239. 239GSMM Model Validator · gsmm-validatorChecks a COBRApy metabolic model for balance, dead ends, loops and gene-rule errors
  240. 240Metabolic Study Planner · metabolic-study-plannerTurns a vague metabolic modelling topic into a concrete, feasible FBA study plan before code is written.
  241. 241MFA Pipeline Orchestrator · mfa-pipeline-orchestratorRuns a full metabolic flux analysis pipeline (model to yield and figures) by coordinating sub-agents.
  242. 242Stat Result Validator · stat-result-validatorAudits statistical research outputs for formulation, theory, evidence and claim consistency
  243. 243Statistical Experiment Evaluation · statistical-experimental-evaluationDesigns and records statistical experiments that test research claims against baselines and theory.
  244. 244Statistical Theory Analysis · statistical-theory-analysisAnalyze the theoretical properties of statistical methods: bias, variance, consistency, coverage, and more.
  245. 245Image Classification Best Practices · cv-classificationGuides the agent on choosing architectures, training recipes and benchmark targets for image classification.
  246. 246Object Detection Best Practices · cv-detectionGuides the agent on object detection architectures, training recipes, and COCO/VOC benchmarks.
  247. 247NLP Alignment Best Practices · nlp-alignmentGuides an agent through LLM alignment methods (RLHF, DPO, GRPO, SFT) and training pitfalls
  248. 248NLP Pretraining Best Practices · nlp-pretrainingGuides the agent to write and review language model training code using standard fine-tuning recipes.
  249. 249Experimental Design Best Practices · experimental-designGuides the agent to plan ML experiments with proper baselines, seeds, ablations and controls.
  250. 250Meta-Analysis Methods · meta-analysisGuides the agent to combine and compare results across studies using effect sizes and confidence intervals.
  251. 251Systematic Literature Review · systematic-reviewGuides the agent through a PRISMA-style literature search, screening, and synthesis
  252. 252pyvene Causal Interventions · pyvene-interventionsGuides an agent through causal tracing and activation patching experiments on PyTorch models with pyvene.
  253. 253SAELens Sparse Autoencoder Training · sparse-autoencoder-trainingTrain and analyze sparse autoencoders to find interpretable features inside language models.
  254. 254TransformerLens Interpretability · transformer-lens-interpretabilityLets an agent inspect and edit transformer model internals for mechanistic interpretability research.
  255. 255Cosmos Policy Evaluation · evaluating-cosmos-policySet up and run NVIDIA Cosmos Policy robot evaluations on LIBERO and RoboCasa simulators
  256. 256LLaVA Vision Assistant · llavaGuides an agent to run LLaVA vision-language models for image chat, VQA, and captioning
  257. 257OpenPI Robot Policy Fine-Tuning · fine-tuning-serving-openpiFine-tune and serve Physical Intelligence OpenPI robot models (pi0, pi0.5) with JAX or PyTorch
  258. 258Fine-Tuning OpenVLA-OFT · fine-tuning-openvla-oftGuides fine-tuning and evaluating OpenVLA-OFT robot action models on LIBERO and ALOHA setups
  259. 259Research Idea Brainstorming · brainstorming-research-ideasGuides researchers through structured frameworks to generate and test research ideas
  260. 260ARA Compiler · ara-compilerTurns papers, repos, and research notes into a structured, machine-traversable research artifact
  261. 261ARA Rigor Reviewer · ara-rigor-reviewerScores a research artifact's evidence, claims and methods on six dimensions and writes a severity-ranked review report.
  262. 262arXiv Research Assistant · arxivSearch, read, cite and download arXiv papers and pull citation data from Semantic Scholar.
  263. 263Deep Research · deep-researchRuns multi-source research with parallel sub-agents and writes a cited report.
  264. 264Super Research (Autonomous Research) · super-researchRuns long, disciplined research with logged, comparable, auditable results across eight modes
  265. 265Local Knowledge Base Retriever · kb-retrieverSearches a local folder of docs, PDFs and Excel files to answer questions with source citations
  266. 266Deep Research Reports · deep-researchRuns multi-round web research, cross-checks facts, and delivers a cited Word report.
  267. 267Google Places Lookup · goplacesSearch places, get details and reviews via the goplaces CLI and Google Places API
  268. 268HF Paper Publisher · huggingface-paper-publisherIndex, link, and claim research papers on the Hugging Face Hub and generate paper templates.
  269. 269Hugging Face Paper Lookup · huggingface-papersLets your agent read and summarize AI research papers from Hugging Face or arXiv using the HF papers API.
  270. 270Ads Research Refresh · ads-researchRefresh and verify paid-media platform, API and policy claims against current official sources
  271. 271Evil Twin Wi-Fi Attacks · offensive-evil-twinGuides an agent through rogue Wi-Fi access point attacks: impersonation, KARMA/Mana, captive portal phishing, and traffic interception
  272. 272Westlaw Deep Research · cocounsel-legal:deep-researchRuns multi-step legal research on Westlaw and returns a written U.S. law research report
  273. 273Freedom-to-Operate Patent Triage · fto-triageGives a first-pass screen of patents that could block a product, flagged as not a clearance opinion
  274. 274Matter Update Logger · matter-updateLogs dated litigation matter events and refreshes the matter log, with materiality and settlement checks.
  275. 275NPRM Comment Deadline Tracker · commentsTracks open federal rulemaking comment deadlines and logs filing decisions for legal review.
  276. 276Customize Regulatory Profile · customizeChange one part of your regulatory practice profile without re-running the full setup interview.
  277. 277Policy Redraft Drafter · policy-redraftDrafts a marked-up, proposed fix to a policy section that closes a flagged compliance gap.
  278. 278Regulatory Feed Watcher · reg-feed-watcherChecks regulatory feeds and reports new, material rule changes since the last check
  279. 279Game Research Web Search · game-research-websearchResearch game modding techniques on the web, recovering dead forum pages via archives and citing sources.
  280. 280Rank Tracking · rank-trackingShows which search keywords and pages gained or lost Google rankings between two periods, using Search Console data.
  281. 281Long-form web novel market scan · story-long-scanScans Chinese web-novel rankings (Qidian, Fanqie, Jjwxc, Qimao, Ciweimao) to spot trending genres for a new novel.
  282. 282Constraint Mapper · ljg-constraintFinds the few real limits that shape a domain, role, or debate, and explains its behavior from them
  283. 283Mechanism Research Skill · ljg-mechanismInvestigates how a phenomenon arises, tests causal claims online, and reports the best-supported mechanism with its limits.
  284. 284ljg-paper: 论文讲解笔记 · ljg-paperTurns a research paper into a plain-language Markdown note a non-specialist can follow
  285. 285Structure Wind-Tunnel Analysis · ljg-structureFinds the recurring underlying structure in a piece of information and stress-tests its causal logic
  286. 286Deep Research Orchestrator · deep-researchRuns multi-source, cited, fact-checked research by splitting work across sub-agents and writing an HTML report.
  287. 287Knowledge Base Search · knowledge-baseSearch and cite documents in your configured Yuxi knowledge bases to answer questions from them.
  288. 288Learn: Multi-Source Research Workflow · learnTurns scattered sources into a structured, publish-ready reference with a six-phase research process.
  289. 289Read URL or PDF · readFetch a web page or PDF and return a source-grounded summary, quotes, or clean Markdown.
  290. 290UZI Deep Stock Analysis · deep-analysisRuns a multi-step A-share/HK/US stock research workflow with 65 investor personas and an HTML report
  291. 291Investor Panel (Virtual Investor Vote) · investor-panelSimulates a panel of famous investor personas scoring a stock by their own methods